Signal peptidase

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SPC structure as ribbon view
Structure of the human signal peptidase complex (PDB code 7P2P)
Peptidase_S26
Identifiers
SymbolPeptidase_S26
PfamPF10502
Pfam clanCL0299
InterProIPR019533
MEROPSS26
OPM superfamily137
OPM protein1t7d
Membranome323
Available protein structures:
Pfam  structures / ECOD  
PDBRCSB PDB; PDBe; PDBj
PDBsumstructure summary
Signal peptidase complex subunit 3
Identifiers
SymbolSP3
PfamPF04573
InterProIPR007653
Membranome369
Available protein structures:
Pfam  structures / ECOD  
PDBRCSB PDB; PDBe; PDBj
PDBsumstructure summary
Signal peptidase I
Identifiers
EC no.3.4.21.89
CAS no.65979-36-4
Databases
IntEnzIntEnz view
BRENDABRENDA entry
ExPASyNiceZyme view
KEGGKEGG entry
MetaCycmetabolic pathway
PRIAMprofile
PDB structuresRCSB PDB PDBe PDBsum
Gene OntologyAmiGO / QuickGO
Search
PMCarticles
PubMedarticles
NCBIproteins
Signal peptidase II
Identifiers
EC no.3.4.23.36
CAS no.171715-14-3
Databases
IntEnzIntEnz view
BRENDABRENDA entry
ExPASyNiceZyme view
KEGGKEGG entry
MetaCycmetabolic pathway
PRIAMprofile
PDB structuresRCSB PDB PDBe PDBsum
Gene OntologyAmiGO / QuickGO
Search
PMCarticles
PubMedarticles
NCBIproteins

Signal peptidases are enzymes that convert secretory and some membrane proteins to their mature or pro forms by cleaving their signal peptides from their N-termini.

Signal peptidases were initially observed in endoplasmic reticulum (ER)-derived membrane fractions isolated from mouse myeloma cells.[1] The key observation by César Milstein and colleagues was that immunoglobulin light chains were produced in a higher molecular weight form, which became processed by the ER membrane fraction. This finding was directly followed by the discovery of the translocation machinery.[2] Signal peptidases are also found in prokaryotes as well as the protein import machinery of mitochondria and chloroplasts.[3]

All signal peptidases described so far are serine proteases. The active site that endoproteolytically cleaves signal peptides from translocated precursor proteins is located at the extracytoplasmic site of the membrane. The eukaryotic signal peptidase is an integral membrane protein complex. The first subunit, which was identified by yeast genetics is Sec11, a 17 kDa membrane protein that is associated with three subunits termed Spc3p (21 kDa), Spc2p (18 kDa) and Spc1p (11 kDa). Sec11 is the only essential factor for signal peptide processing as can be deduced from a growth defect upon its deletion.[4] The functional signal peptidase complex was first purified from a canine ER membrane fraction.[5] The five mammalian subunits, originally named according to their molecular weight are referred to as SPCS1 (SPC12), SEC11A (SPC18), SEC11C (SPC21), SPCS3 (SPC22/23) and SPCS2 (SPC25). These subunits assemble into two distinct paralogous complexes differing in their catalytic subunit SEC11A and SEC11C, respectively, which exhibit largely identical structures.[6] The SPC structure suggests that the enzyme has a transmembrane domain that is only accessible to signal peptides with their characteristically short helical segment.

References

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  1. ^ Milstein C, Brownlee GG, Harrison TM, Mathews MB (September 1972). "A possible precursor of immunoglobulin light chains". Nature. 239 (91): 117–120. doi:10.1038/newbio239117a0. PMID 4507519.
  2. ^ Blobel G, Dobberstein B (December 1975). "Transfer of proteins across membranes. I. Presence of proteolytically processed and unprocessed nascent immunoglobulin light chains on membrane-bound ribosomes of murine myeloma". The Journal of Cell Biology. 67 (3): 835–851. doi:10.1083/jcb.67.3.835. PMC 2111658. PMID 811671.
  3. ^ Paetzel M, Karla A, Strynadka NC, Dalbey RE (December 2002). "Signal peptidases". Chemical Reviews. 102 (12): 4549–4580. doi:10.1021/cr010166y. PMID 12475201.
  4. ^ Böhni PC, Deshaies RJ, Schekman RW (April 1988). "SEC11 is required for signal peptide processing and yeast cell growth". The Journal of Cell Biology. 106 (4): 1035–1042. doi:10.1083/jcb.106.4.1035. PMC 2115025. PMID 3283143.
  5. ^ Evans EA, Gilmore R, Blobel G (February 1986). "Purification of microsomal signal peptidase as a complex". Proceedings of the National Academy of Sciences of the United States of America. 83 (3): 581–585. Bibcode:1986PNAS...83..581E. doi:10.1073/pnas.83.3.581. PMC 322907. PMID 3511473.
  6. ^ Liaci AM, Steigenberger B, Telles de Souza PC, Tamara S, Gröllers-Mulderij M, Ogrissek P, et al. (October 2021). "Structure of the human signal peptidase complex reveals the determinants for signal peptide cleavage". Molecular Cell. 81 (19): 3934–3948.e11. doi:10.1016/j.molcel.2021.07.031. hdl:1874/412779. PMID 34388369. S2CID 237010364.
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Further reading

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