Enzyme | PDB code | Source | Recognition sequence | Cut | Isoschizomers |
CacI | | Clostridium acetobutylicum N1-4081 | 5' GATC 3' CTAG | 5' --- GATC--- 3' 3' ---CTAG --- 5' | |
Cac8I | | Clostridium acetobutylicum ABKn8 | 5' GCNNGC 3' CGNNCG | 5' ---GCN NGC--- 3' 3' ---CGN NCG--- 5' | |
CaiI | | Comamonas acidovarans Iti19-021 | 5' CAGNNNCTG 3' GTCNNNGAC | 5' ---CAGNNN CTG--- 3' 3' ---GTC NNNGAC--- 5' | AlwNI |
CauI | | Chloroflexus aurantiacus | 5' GGWCC 3' CCWGG | 5' ---G GWCC--- 3' 3' ---CCWG G--- 5' | BamNxI, BcuAI, BsrAI, Eco47I, FspMSI, HgiCII, HgiJI, SmuEI |
CauII | | Chloroflexus aurantiacus | 5' CCSGG 3' GGSCC | 5' ---CC SGG--- 3' 3' ---GGS CC--- 5' | AhaI, AseII, AsuC2I, BcnI, Eco1831I, EcoHI, Kpn49kII, NciI |
CauB3I | | Chloroflexus aurantiacus B3 | 5' TCCGGA 3' AGGCCT | 5' ---T CCGGA--- 3' 3' ---AGGCC T--- 5' | Aor13HI, BbvAIII, BseAI, BspEI, BspMII, Kpn2I, MroI, PtaI |
CbiI | | Clostridium bifermentans B-4 | 5' TTCGAA 3' AAGCTT | 5' ---TT CGAA--- 3' 3' ---AAGC TT--- 5' | Asp10HI, Bim19I, BsiCI, BspT104I, Csp45I, LspI, NspV, SspRFI |
CboI | | Clostridium botulinum | 5' CCGG 3' GGCC | 5' ---C CGG--- 3' 3' ---GGC C--- 5' | |
CbrI | | Citrobacter braakii 1146 | 5' CCWGG 3' GGWCC | 5' ---CC WGG--- 3' 3' ---GGW CC--- 5' | AorI, BseBI, Bse24I, BstNI, BstOI, Bst2UI, BthDI, EcoRII, MvaI |
CciNI | | Curtobacterium citreus | 5' GCGGCCGC 3' CGCCGGCG | 5' ---GC GGCCGC--- 3' 3' ---CGCCGG CG--- 5' | |
CcoI | | Clostridium coccoides B-2 | 5' GCCGGC 3' CGGCCG | 5' ---GCC GGC--- 3' 3' ---CGG CCG--- 5' | |
CcrI | | Caulobacter crescentus CB-13 | 5' CTCGAG 3' GAGCTC | 5' ---C TCGAG--- 3' 3' ---GAGCT C--- 5' | |
CcuI | | Chroococcidiopsis cubana | 5' GGNCC 3' CCNGG | 5' ---G GNCC--- 3' 3' ---CCNG G--- 5' | AsuI, Bal228I, BavBII, BsiZI, BspF4I, Cfr13I, Nsp7121I, PspPI |
CcyI | | Clostridium cylindrosporum | 5' GATC 3' CTAG | 5' --- GATC--- 3' 3' ---CTAG --- 5' | BfuCI, Bsp67I, Bst19II, CviAI, FnuCI, MboI, NmeCI, SauMI |
CdiI | | Citrobacter freundii RFL2 | 5' CATCG 3' GTAGC | 5' ---CATC G--- 3' 3' ---GTAG C--- 5' | |
CelI | | Citrobacter freundii RFL6 | 5' GGATCC 3' CCTAGG | 5' ---G GATCC--- 3' 3' ---CCTAG G--- 5' | AliI, ApaCI, AsiI, BamHI, CelI, NspSAIV, RspLKII, SolI, Uba4009I |
CelII | | Coccochloris elabens 17a | 5' GCTNAGC 3' CGANTCG | 5' ---GC TNAGC--- 3' 3' ---CGANT CG--- 5' | |
CeqI | | Corynebacterium equi | 5' GATATC 3' CTATAG | 5' ---GAT ATC--- 3' 3' ---CTA TAG--- 5' | |
CflI | | Cellulomonas flavigena | 5' CTGCAG 3' GACGTC | 5' ---CTGCA G--- 3' 3' ---G ACGTC--- 5' | AjoI, BloHII, CflI, CstI, Ecl37kI, PaePI, PstI, SalPI, Srl5DI, Sst12I |
CfoI | | Clostridium formicoaceticum | 5' GCGC 3' CGCG | 5' ---GCG C--- 3' 3' ---C GCG--- 5' | AspLEI, BspLAI, BstHHI, FnuDIII, HhaI, HinP1I, HsoI, HspAI, SciNI |
CfrI | | Citrobacter freundii RFL2 | 5' YGGCCR 3' RCCGGY | 5' ---Y GGCCR--- 3' 3' ---RCCGG Y--- 5' | |
Cfr6I | | Citrobacter freundii RFL6 | 5' CAGCTG 3' GTCGAC | 5' ---CAG CTG--- 3' 3' ---GTC GAC--- 5' | |
Cfr9I | | Citrobacter freundii | 5' CCCGGG 3' GGGCCC | 5' ---C CCGGG--- 3' 3' ---GGGCC C--- 5' | AhyI, EaeAI, EclRI, Pac25I, PspAI, TspMI, XcyI, XmaI, XmaCI |
Cfr10I[7][8] | 1CFR | Citrobacter freundii RFL10 | 5' RCCGGY 3' YGGCCR | 5' ---R CCGGY--- 3' 3' ---YGGCC R--- 5' | |
Cfr13I | | Citrobacter freundii RFL13 | 5' GGNCC 3' CCNGG | 5' ---G GNCC--- 3' 3' ---CCNG G--- 5' | AsuI, Bal228I, BavBII, BsiZI, BspF4I, FmuI, Nsp7121I, PspPI |
Cfr42I | | Citrobacter freundii RFL42 | 5' CCGCGG 3' GGCGCC | 5' ---CCGC GG--- 3' 3' ---GG CGCC--- 5' | SacII, CscI, HgaI |
CfrA4I | | Citrobacter freundii A4 | 5' CTGCAG 3' GACGTC | 5' ---CTGCA G--- 3' 3' ---G ACGTC--- 5' | AjoI, BloHII, CflI, CstI, Ecl2zI, PaePI, PstI, SalPI, Srl5DI, Sst12I |
CfrBI | | Citrobacter freundii 4111 | 5' CCWWGG 3' GGWWCC | 5' ---C CWWGG--- 3' 3' ---GGWWC C--- 5' | |
CfrJ4I | | Citrobacter freundii J4 | 5' CCCGGG 3' GGGCCC | 5' ---CCC GGG--- 3' 3' ---GGG CCC--- 5' | AhyI, CfrJ4I, EaeAI, EclRI, Pac25I, SmaI, TspMI, XcyI, XmaI |
CfuI | | Caulobacter fusiformis BC-25 | 5' GATC 3' CTAG | 5' ---GA TC--- 3' 3' ---CT AG--- 5' | |
CfuII | | Caulobacter fusiformis BC-25 | 5' CTGCAG 3' GACGTC | 5' ---CTGCA G--- 3' 3' ---G ACGTC--- 5' | AjoI, AliAJI, CfuII, HalII, PaePI, Psp23I, PstI, SalPI, Srl5DI, YenI |
ChaI | | Corynebacterium halofytica | 5' GATC 3' CTAG | 5' ---GATC --- 3' 3' --- CTAG--- 5' | BfuCI, Bsp2095I, BspKT6I BtkII, FnuCI, MboI, NmeCI, SsiAI |
CjeI | | Campylobacter jejuni P37 | 5' CCAN6GT 3' GGTN6CA | 5' ---CCAN6GTN8NNNNNNN --- 3' 3' ---GGTN6CAN8N NNNNNN--- 5' | — None on May 2010 — |
CjePI | | Campylobacter jejuni P116 | 5' CCAN7TC 3' GGTN7AG | 5' ---CCAN7TCN7NNNNNNN --- 3' 3' ---GGTN7AGN7N NNNNNN--- 5' | — None on May 2010 — |
ClaI | | Caryophanon latum L | 5' ATCGAT 3' TAGCTA | 5' ---AT CGAT--- 3' 3' ---TAGC TA--- 5' | AagI, BanIII, BavCI, Bsa29I, BseCI, BspDI, Bsu15I, BsuTUI |
CltI | | Caryophanon latum | 5' GGCC 3' CCGG | 5' ---GG CC--- 3' 3' ---CC GG--- 5' | |
CpfI | | Clostridium perfringens | 5' GATC 3' CTAG | 5' --- GATC--- 3' 3' ---CTAG --- 5' | AspMDI, Bsp67I, Bst19II, CcyI, FnuCI, MboI, NphI, SauMI |
CpoI | | Caseobacter polymorphus | 5' CGGWCCG 3' GCCWGGC | 5' ---CG GWCCG--- 3' 3' ---GCCWG GC--- 5' | |
CscI | | Calothrix scopulorum | 5' CCGCGG 3' GGCGCC | 5' ---CCGC GG--- 3' 3' ---GG CGCC--- 5' | Cfr42I, SacII, HgaI |
CsiAI | | Corynebacterium sp. A | 5' ACCGGT 3' TGGCCA | 5' ---A CCGGT--- 3' 3' ---TGGCC A--- 5' | AgeI, AsiAI, | AsiGI, | BshTI | CspAI, PinAI | |
CsiBI | | Corynebacterium sp. B | 5' GCGGCCGC 3' CGCCGGCG | 5' ---GC GGCCGC--- 3' 3' ---CGCCGG CG--- 5' | |
CspI | | Corynebacterium sp. | 5' CGGWCCG 3' GCCWGGC | 5' ---CG GWCCG--- 3' 3' ---GCCWG GC--- 5' | |
Csp6I | | Corynebacterium sp. RFL6 | 5' GTAC 3' CATG | 5' ---G TAC--- 3' 3' ---CAT G--- 5' | AfaI, CviQI, CviRII, HpyBI, PabI, PlaAII, RsaI, RsaNI, |
Csp45I | | Clostridium sporogenes | 5' TTCGAA 3' AAGCTT | 5' ---TT CGAA--- 3' 3' ---AAGC TT--- 5' | Asp10HI, Bim19I, BsiCI, BspT104I, FspII, LspI, NspV, SspRFI |
CspAI | | Corynebacterium sp. 301 | 5' ACCGGT 3' TGGCCA | 5' ---A CCGGT--- 3' 3' ---TGGCC A--- 5' | AgeI, AsiAI, | AsiGI, | BshTI | CsiAI, PinAI | |
CspBI | | Corynebacterium sp. B | 5' GCGGCCGC 3' CGCCGGCG | 5' ---GC GGCCGC--- 3' 3' ---CGCCGG CG--- 5' | |
CspCI | | Citrobacter sp. 2144 | 5' CAAN4NGTGG 3' GTTN4NCACC | 5' ---CAAN5GTGGN8NNNN --- 3' 3' ---GTTN5CACCN8NN NN--- 5' | — None on May 2010 — |
Csp68KI | | Cyanothece sp. BH68K | 5' GGWCC 3' CCWGG | 5' ---G GWCC--- 3' 3' ---CCWG G--- 5' | BamNxI, BcuAI, BsrAI, Eco47I, FspMSI, HgiCII, Kzo49I, SmuEI |
Csp68KII | | Cyanothece sp. BH68K | 5' TTCGAA 3' AAGCTT | 5' ---TT CGAA--- 3' 3' ---AAGC TT--- 5' | Asp10HI, Bim19I, BsiCI, BstBI, Csp45I, LspI, PlaII, SviI |
Csp68KIII | | Cyanothece sp. BH68K | 5' ATGCAT 3' TACGTA | 5' ---ATGCA T--- 3' 3' ---T ACGTA--- 5' | BfrBI, EcoT22I, Mph1103I, NsiI, PinBI, Ppu10I, SspD5II, Zsp2I |
Csp68KVI | | Cyanothece sp. BH68K | 5' CGCG 3' GCGC | 5' ---CG CG--- 3' 3' ---GC GC--- 5' | BepI, Bpu95I, Bsp123I, BstFNI, BstUI, BtkI, FalII, SelI, ThaI |
CspKVI | | Cyanothece sp. BH68K | 5' CGCG 3' GCGC | 5' ---CG CG--- 3' 3' ---GC GC--- 5' | |
CstI | | Clostridium sticklandii | 5' CTGCAG 3' GACGTC | 5' ---CTGCA G--- 3' 3' ---G ACGTC--- 5' | AjoI, AliAJI, CfrA4I, HalII, MhaAI, Pfl21I, PstI, SflI, Srl5DI, YenI |
CstMI | | Corynebacterium striatum M82B | 5' AAGGAG 3' TTCCTC | 5' ---AAGGAGN17NNN --- 3' 3' ---TTCCTCN17N NN--- 5' | — None on May 2010 — |
CthII | | Clostridium thermocellum | 5' CCWGG 3' GGWCC | 5' ---CC WGG--- 3' 3' ---GGW CC--- 5' | ApaORI, BseBI, Bse24I, Bst2UI, BstNI, BstM6I, EcoRII, MvaI |
CviAI | | Chlorella NC64A (PBCV-1) | 5' GATC 3' CTAG | 5' --- GATC--- 3' 3' ---CTAG --- 5' | Bme12I, Bsp67I, Bst19II, CcyI, FnuCI, MgoI, NphI, SauMI |
CviAII | | Chlorella NC64A (PBCV-1) | 5' CATG 3' GTAC | 5' ---C ATG--- 3' 3' ---GTA C--- 5' | |
CviBI | | Chlorella NC64A (NC-1A) | 5' GANTC 3' CTNAG | 5' ---G ANTC--- 3' 3' ---CTNA G--- 5' | |
CviJI | | Chlorella NC64A (IL-3A) | 5' RGCY 3' YCGR | 5' ---RG CY--- 3' 3' ---YC GR--- 5' | |
CviQI | | Chlorella NC64A (NY-2A) | 5' GTAC 3' CATG | 5' ---G TAC--- 3' 3' ---CAT G--- 5' | AfaI, Csp6I, CviRII, HpyBI, PabI, PlaAII, RsaI, RsaNI, |
CviRI | | Chlorella NC64A (XZ-6E) | 5' TGCA 3' ACGT | 5' ---TG CA--- 3' 3' ---AC GT--- 5' | |
CviRII | | Chlorella NC64A (XZ-6E) | 5' GTAC 3' CATG | 5' ---G TAC--- 3' 3' ---CAT G--- 5' | AfaI, Csp6I, CviQI, HpyBI, PabI, PlaAII, RsaI, RsaNI, |
CviTI | | Chlorella NC64A (CA-1A) | 5' RGCY 3' YCGR | 5' ---RG CY--- 3' 3' ---YC GR--- 5' | |
CvnI | | Chromatium vinosum | 5' CCTNAGG 3' GGANTCC | 5' ---CC TNAGG--- 3' 3' ---GGANT CC--- 5' | AocI, AxyI, Bse21I, Bsu36I, Eco81I, MstII, SauI, SshAI |