Weizmannia
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| Genus: | Weizmannia Gupta et al. 2020 |
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Weizmannia is a genus of Gram-Positive rod-shaped bacteria in the family Bacillaceae from the order Bacillales.[1][2] The type species of this genus is Weizmannia coagulans.[3]
Members of Weizmannia are previously species belonging to Bacillus, a genus that has been recognized as displaying extensive polyphyly and phylogenetic heterogeneity due to the vague criteria[4] (such as the ability to form endospores in the presence of oxygen)[5] previously used to assign species to this clade. Multiple studies using comparative phylogenetic analyses have been published in an attempt to clarify the evolutionary relationships between Bacillus species, resulting in the establishment of numerous novel genera such as Alkalihalobacillus, Brevibacillus, Solibacillus, Alicyclobacillus, Virgibacillus and Evansella.[6][7][8][9][10][1] In addition, the genus Bacillus has been restricted to only include species closely related to Bacillus subtilis and Bacillus cereus. [6][1]
The name Weizmannia was named in honour of Dr. Chaim Weizmann (1874–1952), a noted biochemist, who later became the first President of the State of Israel, for his pioneering work in the field of industrial fermentation and microbiology.[1]
Biochemical Characteristics and Molecular Signatures[1][edit]
Members of this genus are aerobic or facultatively anaerobic and found in mainly in soil. All members can produce endospores and are motile (with the exception of Weizmannia ginsengihumi). Weizmannia coagulans has many industrial applications, such as the coagulation of canned milk and flat-souring of other carbohydrate-containing canned foods and the production of lactic acid and various enzymes. It is found in many sources other than soil (canned foods, tomato juice, gelatin, milk, medical preparations and silage).Weizmannia can grow in temperatures ranging from 10°C to 45°C but the optimal growth temperature is in the range of 25-37°C.
Analyses of genome sequences from Weizmannia species identified two conserved signature indels (CSIs) that are exclusively shared by all members of this genus in the proteins acetate kinase and O-methyltransferase.[1] These CSIs provide a reliable molecular means of distinguishing Weizmannia species from other Bacillaceae genera and bacteria.
Taxonomy[edit]
Weizmannia, as of May 2021, contains a total of 3 species with validly published names.[3] This genus was identified as a monophyletic clade and phylogenetically unrelated to other Bacillus species in studies examining the taxonomic relationships within Bacillus.[1] This branching pattern is also observed in the Genome Taxonomy Database (GTDB).[11]
In July 2023, an article in the IJSEM argued that this genus, along with Bacillus acidicola, Bacillus pervagus, and Margalitia should all be subsumed under Heyndrickxia. Being a taxonomic opinion in the IJSEM, the new combination names are considered valid.[12] GTDB release R214 does not yet include this "lumping" change.
References[edit]
- ^ a b c d e f g Gupta, Radhey S.; Patel, Sudip; Saini, Navneet; Chen, Shu (2020-11-01). "Robust demarcation of 17 distinct Bacillus species clades, proposed as novel Bacillaceae genera, by phylogenomics and comparative genomic analyses: description of Robertmurraya kyonggiensis sp. nov. and proposal for an emended genus Bacillus limiting it only to the members of the Subtilis and Cereus clades of species". International Journal of Systematic and Evolutionary Microbiology. 70 (11): 5753–5798. doi:10.1099/ijsem.0.004475. ISSN 1466-5026. PMID 33112222.
- ^ Brenner, Don J.; Krieg, Noel R.; Staley, James T.; Garrity, George M.; Boone, David R.; De Vos, Paul; Goodfellow, Michael; Rainey, Fred A.; Schleifer, Karl-Heinz, eds. (2005). Bergey's Manual® of Systematic Bacteriology. doi:10.1007/0-387-28022-7. ISBN 978-0-387-24144-9.
- ^ a b "Genus: Weizmannia". lpsn.dsmz.de. Retrieved 2021-05-30.
- ^ Ash, Carol; Farrow, J.A.E.; Wallbanks, Sally; Collins, M.D. (2008-06-28). "Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small-subunit-ribosomal RNA sequences". Letters in Applied Microbiology. 13 (4): 202–206. doi:10.1111/j.1472-765x.1991.tb00608.x. ISSN 0266-8254. S2CID 82988953.
- ^ Logan, N. A.; Berge, O.; Bishop, A. H.; Busse, H.-J.; De Vos, P.; Fritze, D.; Heyndrickx, M.; Kampfer, P.; Rabinovitch, L.; Salkinoja-Salonen, M. S.; Seldin, L. (2009-06-30). "Proposed minimal standards for describing new taxa of aerobic, endospore-forming bacteria". International Journal of Systematic and Evolutionary Microbiology. 59 (8): 2114–2121. doi:10.1099/ijs.0.013649-0. ISSN 1466-5026. PMID 19567583.
- ^ a b Patel, Sudip; Gupta, Radhey S. (2020-01-01). "A phylogenomic and comparative genomic framework for resolving the polyphyly of the genus Bacillus: Proposal for six new genera of Bacillus species, Peribacillus gen. nov., Cytobacillus gen. nov., Mesobacillus gen. nov., Neobacillus gen. nov., Metabacillus gen. nov. and Alkalihalobacillus gen. nov". International Journal of Systematic and Evolutionary Microbiology. 70 (1): 406–438. doi:10.1099/ijsem.0.003775. ISSN 1466-5026. PMID 31617837.
- ^ SHIDA, O.; TAKAGI, H.; KADOWAKI, K.; KOMAGATA, K. (1996-10-01). "Proposal for Two New Genera, Brevibacillus gen. nov. and Aneurinibacillus gen. nov". International Journal of Systematic Bacteriology. 46 (4): 939–946. doi:10.1099/00207713-46-4-939. ISSN 0020-7713. PMID 8863420.
- ^ Wisotzkey, J. D.; Jurtshuk, P.; Fox, G. E.; Deinhard, G.; Poralla, K. (1992-04-01). "Comparative Sequence Analyses on the 16S rRNA (rDNA) of Bacillus acidocaldarius, Bacillus acidoterrestris, and Bacillus cycloheptanicus and Proposal for Creation of a New Genus, Alicyclobacillus gen. nov". International Journal of Systematic Bacteriology. 42 (2): 263–269. doi:10.1099/00207713-42-2-263. ISSN 0020-7713. PMID 1374624.
- ^ Mual, Poonam; Singh, Nitin Kumar; Verma, Ashish; Schumann, Peter; Krishnamurthi, Srinivasan; Dastager, Syed; Mayilraj, Shanmugam (2016-05-01). "Reclassification of Bacillus isronensis Shivaji et al. 2009 as Solibacillus isronensis comb. nov. and emended description of genus Solibacillus Krishnamurthi et al. 2009". International Journal of Systematic and Evolutionary Microbiology. 66 (5): 2113–2120. doi:10.1099/ijsem.0.000982. ISSN 1466-5026. PMID 26907585.
- ^ Heyndrickx, M.; Lebbe, L.; Kersters, K.; Hoste, B.; De Wachter, R.; De Vos, P.; Forsyth, G.; Logan, N. A. (1999-07-01). "Proposal of Virgibacillus proomii sp. nov. and emended description of Virgibacillus pantothenticus (Proom and Knight 1950) Heyndrickx et al. 1998". International Journal of Systematic and Evolutionary Microbiology. 49 (3): 1083–1090. doi:10.1099/00207713-49-3-1083. ISSN 1466-5026. PMID 10425765.
- ^ "GTDB - Tree". gtdb.ecogenomic.org. Retrieved 2021-05-28.
- ^ Narsing Rao, MP; Banerjee, A; Liu, GH; Thamchaipenet, A (July 2023). "Genome-based reclassification of Bacillus acidicola, Bacillus pervagus and the genera Heyndrickxia, Margalitia and Weizmannia". International Journal of Systematic and Evolutionary Microbiology. 73 (7). doi:10.1099/ijsem.0.005961. PMID 37462355.